Detalles del patógeno individual¶
Each dashboard is populated a bit differently, from different sources and with different inclusion criteria, using AMR genotyping and lineage definitions specific to the pathogen.
Select a pathogen below to see the details:
Escherichia coli
Escherichia coli (diarreico)
Shigella + EIEC
Klebsiella pneumoniae
Neisseria gonorrhoeae
Salmonella (non-typhoidal)
Salmonella (no-tifoidal invasiva)
Salmonella Typhi
A list of all upstream databases and tools, with links and citations, is available on the Source data & tools page.
AMR definitions based on Enterobase/AMRfinderplus data¶
These definitions are used in the E. coli, Shigella, and non-typhoidal Salmonella dashboards, where data are populated from Enterobase which uses AMRfinderplus to identify AMR determinants from genome assemblies. For other organisms, populated from Pathogenwatch, see the pathogen-specific pages above for details of how AMR is detected/defined.
Resistance indicator variable |
Definition |
Enterobase column/s |
Drawn from AMRFinderPlus Class/Subclass |
|---|---|---|---|
Ampicillin |
≥1 marker from any column |
Penicillin, Carbapenemase, ESBL |
Subclass: BETA-LACTAM |
Aminoglycosides |
≥1 marker |
Aminoglycoside |
Class: AMINOGLYCOSIDE |
Carbapenems |
≥1 marker |
Carbapenemase |
Subclass: CARBAPENEM |
Ciprofloxacin (non-susceptible) |
≥1 marker |
Quinolone |
Class: QUINOLONE |
Chloramphenicol |
≥1 marker |
Phenicol |
Class: PHENICOL |
Colistin |
≥1 marker |
Colistin |
Class: COLISTIN |
ESBL |
≥1 marker from any column |
ESBL, Carbapenemase |
Subclass: CEPHALOSPORIN |
Fosfomycin |
≥1 marker |
Fosfomycin |
Class: FOSFOMYCIN |
Macrolide |
mph(A) or acrB_R717 |
Macrolide |
Class: MACROLIDE |
Tetracycline |
≥1 marker |
Tetracycline |
Class: TETRACYCLINE |
Tigecycline |
≥1 marker |
Other Classes: Tigecycline |
Subclass: TIGECYCLINE |
Trimethoprim |
≥1 marker |
Trimethoprim |
Class: TRIMETHOPRIM |
Trimethoprim-Sulfamethoxazole |
≥1 marker from each column |
Trimethoprim, Sulfonamide |
Class: TRIMETHOPRIM, SULFONAMIDE |
Pansusceptible |
0 markers |
all AMR columns |
— |